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PATO is an ontology of phenotypic qualities, intended for use in a number of applications, primarily defining composite phenotypes and phenotype annotation, available at http://obofoundry.org/wiki/index.php/PATO:Main_Page.

Announcement

Directory

Genetics Ontology Lite

RIKENBASE

Basic Formal Ontology 1.1.1

CHEBI Chemical entities of biological interest

PATO

Obsolete

absolute incidence value

pato

value

assay

absolute activity

process

relative activity

absolute speed

relative speed

absolute age

relative age

gametophytic compatability

relative compatability

sporophytic compatability

carbohydrate composition

electrolyte composition

macromolecular composition

protein composition

enzyme composition

metabolite composition

secondary product composition

protein concentration

carbohydrate concentration

water content

gel consistency

absolutedistance

relative distance

absolute frequency

relative frequency

absolute number

relative number

parental quality

relative pattern

percentage

absolute percentage

relative percentage

relative pilosity

relative_quality

shattering

threshability

regulation

absolute rhythym

relative rhythym

absolute sensitivity

disease sensitivity

absolute disease sensitivity

relative disease sensitivity

relative sensitivity

stress sensitivity

abiotic stress sensitivity

chemical sensitivity

drug sensitivity

absolute drug sensitivity

relative drug sensitivity

herbicide sensitivity

insecticide sensitivity

plant growth hormone sensitivity

soil composition sensitivity

soil nutrient sensitivity

macronutrient sensitivity

micronutrient sensitivity

osmotic response sensitivity

p h sensitivity

acid sensitivity

alkali sensitivity

salt sensitivity

water sensitivity

drought sensitivity

flooding sensitivity

humidity sensitivity

radiation sensitivity

temperature sensitivity

absolute temperature sensitivity

relative temperature sensitivity

absolute size

absolute height

relative height

absolute length

relative length

absolute mass

relative mass

absolute weight

relative weight

relative size

absolute_angle

relative_angle

absolute orientation

relative orientation

substance

addictive substance

solid substance

liquid substance

absolute temperature

body temperature

relative temperature

relative texture

absolute threshold

pain threshold

relative threshold

absolute temporal

absolute incidence

relative incidence

absolute rate

relative rate

relative temporal

absolute time

bouts

relative time

yield

absolute yield

relative yield

function

autonomic function

behavioral function

metabolic function

physiological function

relative function

body position

body tone

piloerection

abdominal tone

limb tone

arousal

consumption quality

gait

learning_and memory

locomotor_activity

mating

spontaneous_activity

startle response

vocalization

transfer_arousal

absolute consumption

relative consumption

learning

memory

long term memory

short term memory

absolute locomotor_activity

relative locomotor_activity

enzyme function

circulatory function

defensive function

digestive function

excretory function

muscle function

neural function

neurobehavioral function

reproductive function

respiratory function

heart rate

immune function

repair function

healing

regeneration

urination

muscle elevation

muscle strength

motor function

sensory function

tactile response

motor performance

auditory

olfactory

proprioreception

reflex

taste

touch

visual

odor_acuity

odor type

absolute odor_acuity

relative odor_acuity

blinking reflex

contact righting reflex

corneal reflex

flinch reflex

lordosis reflex

ocular reflex

pinna reflex

postural reflex

proboscis extension reflex

pupillary reflex

righting reflex

spinal reflex

startle reflex

suckling reflex

swallowing reflex

vibrissae reflex

taste_acuity

taste type

absolute taste_acuity

relative taste_acuity

visual_ability

visual_acuity

visual placing

visual threshold

absolute visual_ability

relative visual_ability

absolute visual_acuity

relative visual_acuity

absolute visual threshold

relative visual threshold

defecation

prepulse inhibition

relative neurobehavioral function

gestational period

hybrid fertility

backcross fertility

cytoplasmic sterility

f1 fertility

f2 fertility

germ line dependent fertility

soma dependent fertility

cytoplasmic male sterility

absolute litter size

relative litter size

respiratory rate

absolute respiratory rate

relative respiratory rate

mobility value

absolute activity value

process value

relative activity value

speed value

not arrested value

absolute speed value

relative speed value

age value

absolute age value

relative age value

color value

color hue value

color intensity value

color saturation value

flourescence value

color pattern value

relative color value

bright

dim

absolute odor_acuity

variegated

compatability value

gametophytic compatability value

relative compatability value

sporophytic compatability value

gametophyte compatible value

gametophyte incompatible value

sporophyte compatible value

sporophyte incompatible value

composition value

carbohydrate composition value

electrolyte composition value

macromolecular composition value

metabolite composition value

secondary product composition value

protein composition value

enzyme composition value

concentration value

protein concentration value

sugar concentration value

water content value

consistency value

gel consistency value

direction value

away

bi-directional

towards1

unidirectional

distance value

absolute distance value

relative distance value

flavor value

frequency value

absolute frequency value

relative frequency value

gender value

hardness value

intensity value

extreme

intense

limited

maximal

slight

vigorous

life span value

morphology value

shape value

proprioreception

count value

absolute number value

relative number value

nutritional value

occurence value

continual

speed value

unique

odor value

parental type value

paternal

maternal

pattern value

concrete

sleep pattern value

perseverative

insomnia

narcolepsy

percentage value

relative percentage value

absolute percentage value

decreased percentage

high percentage

increased percentage

low percentage

pilosity value

relative pilosity value

abstract

deviation(from_normal) value

presence value

relative quantity value

marked

none

relative speed value

high

low

quality value

relative_quality value

shattering value

threshability value

bad value

good value

poor value

regulation value

positive regulation

negative regulation

response value

tactile hyperresponsive

tactile hyporesponsive

mild response

moderate response

vigorous response

rhythym value

sensitivity value

absolute rhythym value

amplitude value

period value

persistence value

phase value

relative rhythym value

absolute sensitivity value

disease sensitivity value

relative sensitivity value

stress sensitivity value

temperature sensitivity value

absolute disease sensitivity value

relative disease sensitivity value

intolerant value

abiotic stress sensitivity value

chemical sensitivity value

humidity sensitivity value

radiation sensitivity value

drug sensitivity value

herbicide sensitivity value

insecticide sensitivity value

plant growth hormone sensitivity value

soil composition sensitivity value

absolute drug sensitivity value

relative drug sensitivity value

drug insensitive

drug sensitive

soil nutrient sensitivity value

macronutrient sensitivity value

micronutrient sensitivity value

osmotic response sensitivity

p h sensitivity value

salt sensitivity value

water sensitivity value

acid sensitivity value

alkali sensitivity value

drought sensitivity value

flooding sensitivity value

photosensitivity value

absolute photosensitivity value

light intensivity sensitivity value

light_quality sensitivity value

relative photosensitivity value

blue light sensitivity value

far red light sensitivity value

red light sensitivity value

u v light sensitivity value

absolute temperature sensitivity value

relative temperature sensitivity value

cold sensitive

heat sensitive

thermoinsensitive

thermosensitive

size value

absolute size value

height value

length value

mass value

relative size value

thickness value

volume value

width value

absolute height value

relative height value

absolute length value

relative length value

absolute mass value

relative mass value

weight value

absolute weight value

relative weight value

absolute thickness value

relative thickness value

absolute volume value

relative volume value

absolute width value

relative width value

spatial value

angle value

closure value

orientation value

placement value

absolute angle value

relative angle value

absolute orientation value

relative orientation value

structure value

deposition defective

substance value

addictive substance value

alcochol value

amphetamine value

time_quantity

length_quantity

metamphetamine value

temparature_quantity

angle_quantity

solid substance value

volume_quantity

occurrent

substance_quantity

energy_quantity

liquid substance value

mass_quantity

concentration_unit

saccharin versus water value

water value

unit

temperature value

absolute temperature value

body temperature value

relative temperature value

temporal value

absolute temporal value

incidence value

rate value

relative temporal value

relative incidence value

absolute rate value

relative rate value

late

texture value

relative texture value

floury

glutinous

threshold value

absolute threshold value

pain threshold value

relative threshold value

time value

absolute time value

bouts value

relative time value

latency value

viability value

yield value

absolute yield value

relative yield value

high yield

low yield

function value

autonomic function value

behavioral function value

metabolic function value

physiological function value

relative function value

body position value

body tone value

piloerection value

abdominal tone value

limb tone value

dysfunctional value

functional value

enzyme function value

absolute enzyme function value

relative enzyme function value

high enzyme function value

low enzyme function value

arousal value

balance value

behavioral quality value

consumption value

coordination value

discrimination value

gait value

learning and memory value

locomotor activity value

mating value

spontaneous activity value

startle response

vocalization value

transfer arousal value

impaired

absolute consumption value

relative consumption value

increased consumption

decreased consumption

bizarre gate

learning value

memory value

long term memory value

short term memory value

absolute locomotor activity value

relative locomotor activity value

circulatory function value

defensive function value

digestive function value

excretory function value

muscle function value

neural function value

neurobehavioral function value

reproductive function value

respiratory function value

heart rate value

immune function value

repair function value

immubocompetent value

immunodeficient value

healing value

regeneration value

urination value

defecation value

muscle elevation value

muscle strength value

motor function value

sensory function value

tactile response value

motor performance value

auditory value

olfactory value

proprioreception value

reflex value

taste value

touch value

visual value

odor acuity value

odor type value

taste acuity value

absolute odor acuity value

relative odor acuity value

anosmia

concentration_quantity

quantity

absolute taste acuity value

relative taste acuity value

taste type value

quinine taste

water taste

visual ability value

visual acuity value

visual threshold value

visual placing value

absolute visual ability value

relative visual ability value

absolute visual acuity value

relative visual acuity value

absolute visual threshold value

relative visual threshold value

auditory acuity value

auditory ability value

auditory threshold value

absolute auditory ability value

relative auditory ability value

absolute auditory acuity value

relative auditory acuity value

absolute auditory threshold value

relative auditory threshold value

auditory acuity

auditory ability

auditory threshold

absolute auditory acuity

relative auditory acuity

absolute auditory ability

relative auditory ability

absolute auditory threshold

relative auditory threshold

blinking reflex value

contact righting reflex value

corneal reflex value

flinch reflex value

lordosis reflex value

ocular reflex value

pinna reflex value

postural reflex value

proboscis extension reflex value

pupillary reflex value

righting reflex value

spinal reflex value

startle reflex value

suckling reflex value

swallowing reflex value

vibrissae reflex value

prepulse inhibition value

relative neurobehavioral function value

aggressive

anxious

cataleptic

fearful

irritable

respiratory rate value

absolute respiratory rate value

relative respiratory rate value

fecundity value

fertility value

gestational period value

litter size value

female fertility value

hybrid fertility value

male fertility value

absolute litter size value

relative litter size value

cytoplasmic male sterility value

backcross fertility value

cytoplasmic sterility value

f1 fertility value

f2 fertility value

germ line dependent fertility value

intercross fertility value

soma dependent fertility value

backcross fertile

backcross sterile

chinsurah boro type value

cms-hl type value

wild abortive value

f1 fertile

f1 sterile

f2 fertile

f2 sterile

intercross fertile

intercross sterile

qualitative value

continuant

absolute thickness

relative thickness

absolute volume

relative volume

absolute width

relative width

relative enzyme function

absolute enzyme function

intercross fertility

absolute photosensitivity

light intensivity sensitivity

light_quality sensitivity

blue light sensitivity

far red light sensitivity

red light sensitivity

u v light sensitivity

relative photosensitivity

regular shape

irregular shape

absolute activity

opacity value

relative opacity

absolute opacity

relative opacity value

absolute opacity value

symmetry value

albino value

absolute permeability

relative permeability

relative porosity

absolute porosity

permeability value

absolute permeability value

relative permeability value

porosity value

absolute porosity value

relative porosity value

absolute consistency

relative consistency

relative consistency value

absolute consistency value

consistent

inconsistent

relative viscosity

absolute viscosity

viscosity value

absolute viscosity value

relative viscosity value

relative alternation

absolute alternation

alternation value

relative alternation value

absolute alternation value

absolute latency

relative latency

absolute latency value

relative latency value

relative intensity

absolute intensity

relative intensity value

absolute intensity value

absolute occurence

relative occurence

absolute occurence value

relative occurence value

physical quantity

low yield

stiffness

relative life span

absolute life span

ratio

absolute ratio

relative ratio

relative amplitude

absolute amplitude

absolute power

relative power

absolute resistance

relative resistance

absolute susceptibility

relative susceptibility

number

relative acceleration

absolute acceleration

relative efficiency

absolute efficiency

relative elasticity

absolute elasticity

relative flux

absolute flux

relative stiffness

absolute stiffness

absolute strain

relative strain

relative density

absolute density

relative energy

absolute energy

relative impulse

absolute impulse

absolute momentum

relative momentum

absolute pressure

relative pressure

absolute work

relative work

physical measure value

damage value

acceleration value

relative acceleration value

absolute acceleration value

efficiency value

relative efficiency value

absolute efficiency value

elasticity value

absolute elasticity value

relative elasticity value

flux value

relative flux value

absolute flux value

force value

absolute force value

relative force value

absolute force

relative force

position value

stiffness value

absolute stiffness value

relative stiffness value

strain value

absolute strain value

relative strain value

density value

relative amplitude value

absolute amplitude value

absolute density value

relative density value

energy value

absolute energy value

relative energy value

impulse value

relative impulse value

absolute impulse value

momentum value

absolute momentum value

relative momentum value

power value

absolute power value

relative power value

pressure value

absolute pressure value

relative pressure value

work value

absolute work value

relative work value

ratio value

absolute ratio value

relative ratio value

immunoglobulin concentration

ig a concentration

ig d concentration

ig e concentration

ig g concentration

ig m concentration

urine glucose composition

immunoglobulin concentration value

ig a concentration value

ig d concentration value

ig e concentration value

ig g concentration value

ig m concentration value

resistance value

absolute resistance value

relative resistance value

susceptibility value

absolute susceptibility value

relative susceptibility value

absolute concentration

relative concentration

absolute concentration value

relative concentration value

unconcentrated

urine enzyme composition value

urine enzyme composition

numerical value

urine glucose composition value

urine composition

deaf

blind

immune

relative response

absolute response

relative response

absolute response value

maturity value

modified direction

unmodified direction

not enlarged

absolute compatability

absolute function

plane_angle_quantity

solid_angle_quantity

length_unit

mass_unit

temparature_unit

time_unit

volume_unit

energy_unit

substance_unit

area_unit

angle_unit

plane_angle_unit

solid_angle_unit

quantitative value

real number

relational number

startle response

dull

cold insensitive

heat insentive

strength value

bright grey

pale grey

left-right symmetry

unknown sex

relative visual threshold value

edematous (sensu botany)

healing value

glutinous

relative width

sugar concentration value

relative enzyme function

relative work value

relaxational quality

enhanced

occurence value

relative consumption

absolute power value

relative auditory threshold value

decreased action potential

increased action potential

cellular polarity

increased relaxation

decreased relaxation

absolute time

life span value

surface shape

post-mortem

pre-mortem

neoplasm disposition

<new term>

absolute incidence value

External ID	PATO:0000684
Date last modified	2013-03-22

Weekly Access Rank for All Databases
Top50 2013-05-14 to 2013-05-20

Weekly Ranking	Database Name	Trend	Organization
1	Researcher	unch.	BASE
2	Cell lines in RIKEN BioResource Center	unch.	BRC
3	Mouse strain in RIKEN BioResource Center	unch.	BRC
4	NCBI Taxonomy	unch.	NCBI
5	PDF File Repository	up	BASE
6	RIKENBASE	down	BASE
7	Scientific Journals	down	NCBI
8	RIKEN Organization	unch.
9	A.thaliana locus	up	TAIR
10	mammalian phenotype ontology	up	OBO
11	Mouse MGI Gene	down	MGI
12	OMIM	down	NCBI
13	Literature repository	unch.
14	DatabaseRegistry	up	BASE
15	RIKEN Phenome Integration of Arabidopsis mutants	down	BASE
16	References in RIKEN BioResource Center	up	BRC
17	Protein Data Bank	down	RCSB
18	InterPro	up	EBI
19	ARTADE2 predicted gene model database	up	BASE
20	MGI Alleles	up	MGI
21	Mouse Ensembl Gene	unch.	Ensembl
22	Plant Phenome	down	PSC,BASE
23	RIKEN Press Releases	down	RIKEN
24	Human Ensembl Gene	up	Ensembl
25	Bacpedia (Riken Harima SPring8-Center)	up	RSC
26	CHEBI Chemical entities of biological interest	up	OBO
27	MGI Strains and Polymorphisms	down	MGI
28	Phenotype annotation in RIKEN BioResource Center	up	BRC
29	Protein Modification (MOD)	up
30	SSBC (Systems and Structural Biology Center)	down	SSBC,RSGI
31	HP Human phenotype ontology	up	OBO
32	The RIKEN integrated database of mammals	down	BASE ,BRC
33	The integrated database of plant omics data	up	PSC, BASE
34	GenoCon 2010	up	BASE
35	The Rice Gene From RAP-DB	down	RAP
36	Entrez Human	up	NCBI
37	A.thaliana cDNA	unch.	PSC, BASE
38	Gene Ontology	up	GO
39	Sequence Design Project	down
40	Promoter collection for genome design	up	BASE
41	FOX Hunting	down	BASE ,PSC
42	TIGR(The International Rice Genome)/MSU(Michigan State University)	up	TIGR
43	DS tag line	down	BRC
44	DNA in RIKEN BioResource Center	up	BRC
45	Swiss-Prot	down	EBI
46	AMMRA	up
47	Cell Type Ontology	down	OBO
48	Biological property data of cell line	down	BRC
49	Type project	up	BRC
50	Sorghum bicolor gene	up	JGI

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URI	http://scinets.org/item/cria135u684i
URL (English)	http://scinets.org/item/cria135u684i?lang=en
URL (Japanese)	http://scinets.org/item/cria135u684i?lang=ja
Attribution	http://scinets.org/item/cria135u684i
PURL	http://purl.jp/bio/13/class/cria135u684i/PATO_0000684

absolute incidence value

Weekly Access Rank for All DatabasesTop50 2013-05-14 to 2013-05-20

Weekly Access Rank for All Databases
Top50 2013-05-14 to 2013-05-20